{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":127293091,"defaultBranch":"master","name":"rnaseq","ownerLogin":"nf-core","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-03-29T13:10:58.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/35520196?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1726768749.0","currentOid":""},"activityList":{"items":[{"before":"f8cce25cd6a7b1c0a1104cd7b3f8a36c3c3ee3fc","after":null,"ref":"refs/heads/revert-1388-dev","pushedAt":"2024-09-19T17:59:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"Shaun-Regenbaum","name":"Shaun Regenbaum","path":"/Shaun-Regenbaum","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12636260?s=80&v=4"}},{"before":null,"after":"f8cce25cd6a7b1c0a1104cd7b3f8a36c3c3ee3fc","ref":"refs/heads/revert-1388-dev","pushedAt":"2024-09-19T17:56:38.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Shaun-Regenbaum","name":"Shaun Regenbaum","path":"/Shaun-Regenbaum","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12636260?s=80&v=4"},"commit":{"message":"Revert \"New module: Kraken2/Bracken on Unaligned Sequences for Contamination Detection\"","shortMessageHtmlLink":"Revert \"New module: Kraken2/Bracken on Unaligned Sequences for Contam…"}},{"before":"0b4125dda192201f914b1529cbb07f51b5645617","after":"da7b99905aae64cd30ed1f59aac595765e0dc975","ref":"refs/heads/dev","pushedAt":"2024-09-19T17:56:24.000Z","pushType":"pr_merge","commitsCount":39,"pusher":{"login":"Shaun-Regenbaum","name":"Shaun Regenbaum","path":"/Shaun-Regenbaum","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12636260?s=80&v=4"},"commit":{"message":"Merge pull request #1388 from egreenberg7/dev\n\nNew module: Kraken2/Bracken on Unaligned Sequences for Contamination Detection","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2536782738\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/rnaseq/issues/1388\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/rnaseq/pull/1388/hovercard\" href=\"https://github.com/nf-core/rnaseq/pull/1388\">#1388</a> from egreenberg7/dev"}},{"before":"b91e7595648338d8c627584566621858db109ff3","after":"0b4125dda192201f914b1529cbb07f51b5645617","ref":"refs/heads/dev","pushedAt":"2024-09-17T12:59:49.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"maxulysse","name":"Maxime U Garcia","path":"/maxulysse","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1019628?s=80&v=4"},"commit":{"message":"Merge pull request #1386 from maxulysse/3.16.0dev\n\nnf-core pipelines bump-version 3.16.0dev","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2530790086\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/rnaseq/issues/1386\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/rnaseq/pull/1386/hovercard\" href=\"https://github.com/nf-core/rnaseq/pull/1386\">#1386</a> from maxulysse/3.16.0dev"}},{"before":"4e34945f6ca86621a08e7d573cd6b4fbb7fb1f0e","after":"4053b2ec173fc0cfdd13ff2b51cfaceb59f783cb","ref":"refs/heads/master","pushedAt":"2024-09-16T16:23:09.000Z","pushType":"pr_merge","commitsCount":26,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Merge pull request #1384 from nf-core/dev\n\nDev -> Master for 3.15.1","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2528716459\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/rnaseq/issues/1384\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/rnaseq/pull/1384/hovercard\" href=\"https://github.com/nf-core/rnaseq/pull/1384\">#1384</a> from nf-core/dev"}},{"before":"18ce34797155ba0eeefd85b6557dfe92880ab094","after":null,"ref":"refs/heads/master_merge","pushedAt":"2024-09-16T16:14:57.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"}},{"before":"53023cd7db30da99c6d4a04a30f0d719bb853222","after":"b91e7595648338d8c627584566621858db109ff3","ref":"refs/heads/dev","pushedAt":"2024-09-16T16:14:52.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Merge pull request #1385 from nf-core/master_merge\n\nMaster merge","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2528866362\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/rnaseq/issues/1385\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/rnaseq/pull/1385/hovercard\" href=\"https://github.com/nf-core/rnaseq/pull/1385\">#1385</a> from nf-core/master_merge"}},{"before":null,"after":"18ce34797155ba0eeefd85b6557dfe92880ab094","ref":"refs/heads/master_merge","pushedAt":"2024-09-16T15:59:59.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Merge branch 'master' into master_merge","shortMessageHtmlLink":"Merge branch 'master' into master_merge"}},{"before":"8def328a32f3046153ece02b972a1c3cef2740a3","after":"53023cd7db30da99c6d4a04a30f0d719bb853222","ref":"refs/heads/dev","pushedAt":"2024-09-16T14:52:37.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Merge pull request #1383 from nf-core/prerelease_3.15.1_fixes\n\nPrerelease 3.15.1 version bumps","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2528499656\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/rnaseq/issues/1383\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/rnaseq/pull/1383/hovercard\" href=\"https://github.com/nf-core/rnaseq/pull/1383\">#1383</a> from nf-core/prerelease_3.15.1_fixes"}},{"before":"ec187a8b6e21be9c7122e11ce25c4425cb10c721","after":"ed31c6fdab2809e4a6f1d98120230851abe45980","ref":"refs/heads/prerelease_3.15.1_fixes","pushedAt":"2024-09-16T13:36:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"update changelog","shortMessageHtmlLink":"update changelog"}},{"before":null,"after":"ec187a8b6e21be9c7122e11ce25c4425cb10c721","ref":"refs/heads/prerelease_3.15.1_fixes","pushedAt":"2024-09-16T13:34:18.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Bump versions","shortMessageHtmlLink":"Bump versions"}},{"before":"5703690c59aab36988374c045e07adbd6da42754","after":null,"ref":"refs/heads/rnaseq_propro_trimfail_fix","pushedAt":"2024-09-16T13:26:19.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"}},{"before":"087a3a7729929f0fddfab9ef8c846dcba018e3b2","after":"8def328a32f3046153ece02b972a1c3cef2740a3","ref":"refs/heads/dev","pushedAt":"2024-09-16T13:26:16.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Merge pull request #1382 from nf-core/rnaseq_propro_trimfail_fix\n\nSlight fixes for rnaseq preprocessing","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2525144440\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/rnaseq/issues/1382\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/rnaseq/pull/1382/hovercard\" href=\"https://github.com/nf-core/rnaseq/pull/1382\">#1382</a> from nf-core/rnaseq_propro_trimfail_fix"}},{"before":"3e9af61bd3fb9f931c5a7058cb17be5240fdfb6f","after":"5703690c59aab36988374c045e07adbd6da42754","ref":"refs/heads/rnaseq_propro_trimfail_fix","pushedAt":"2024-09-16T11:41:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Update changelog","shortMessageHtmlLink":"Update changelog"}},{"before":"8244d506e16506ba3ef3dcc3ed89abc0f5846780","after":"3e9af61bd3fb9f931c5a7058cb17be5240fdfb6f","ref":"refs/heads/rnaseq_propro_trimfail_fix","pushedAt":"2024-09-16T11:35:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"install subworkflow from master","shortMessageHtmlLink":"install subworkflow from master"}},{"before":"5c6982c145699dd1651cf06d3f2140ac5755d8a5","after":"8244d506e16506ba3ef3dcc3ed89abc0f5846780","ref":"refs/heads/rnaseq_propro_trimfail_fix","pushedAt":"2024-09-16T11:30:04.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Merge branch 'dev' into rnaseq_propro_trimfail_fix","shortMessageHtmlLink":"Merge branch 'dev' into rnaseq_propro_trimfail_fix"}},{"before":"3701544623b6de1a56cc27a44466b749bb7417bf","after":"5c6982c145699dd1651cf06d3f2140ac5755d8a5","ref":"refs/heads/rnaseq_propro_trimfail_fix","pushedAt":"2024-09-13T17:00:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Try from branch","shortMessageHtmlLink":"Try from branch"}},{"before":"262672cbfcdc22aac5b067d1d53d4a18b746b0e4","after":"3701544623b6de1a56cc27a44466b749bb7417bf","ref":"refs/heads/rnaseq_propro_trimfail_fix","pushedAt":"2024-09-13T16:57:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Remove chunk duplicated from subworkflow","shortMessageHtmlLink":"Remove chunk duplicated from subworkflow"}},{"before":"ffb223e32b389892ebd577c8abe723484e30a80c","after":"087a3a7729929f0fddfab9ef8c846dcba018e3b2","ref":"refs/heads/dev","pushedAt":"2024-09-13T16:17:53.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"maxulysse","name":"Maxime U Garcia","path":"/maxulysse","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1019628?s=80&v=4"},"commit":{"message":"Merge pull request #1381 from maxulysse/massive_conda_update\n\nMassive conda modules update","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2524637519\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/rnaseq/issues/1381\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/rnaseq/pull/1381/hovercard\" href=\"https://github.com/nf-core/rnaseq/pull/1381\">#1381</a> from maxulysse/massive_conda_update"}},{"before":null,"after":"262672cbfcdc22aac5b067d1d53d4a18b746b0e4","ref":"refs/heads/rnaseq_propro_trimfail_fix","pushedAt":"2024-09-13T15:47:38.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"slight fixes for rnaseq prepro","shortMessageHtmlLink":"slight fixes for rnaseq prepro"}},{"before":"765e67df300d2399d45efcf95271a87d4d598e41","after":null,"ref":"refs/heads/fix_tximport_summarizedexperiment","pushedAt":"2024-09-13T11:30:52.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"}},{"before":"085ecfe8c46a6e2766990c0195de608d04e3e01f","after":"ffb223e32b389892ebd577c8abe723484e30a80c","ref":"refs/heads/dev","pushedAt":"2024-09-13T11:30:49.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Merge pull request #1380 from nf-core/fix_tximport_summarizedexperiment\n\nFix issues with R modules changing sample names","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2524499598\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/rnaseq/issues/1380\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/rnaseq/pull/1380/hovercard\" href=\"https://github.com/nf-core/rnaseq/pull/1380\">#1380</a> from nf-core/fix_tximport_summarizedexperiment"}},{"before":"457bdd992a86116dc6b3e5278e381b59024919e7","after":"765e67df300d2399d45efcf95271a87d4d598e41","ref":"refs/heads/fix_tximport_summarizedexperiment","pushedAt":"2024-09-13T10:35:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Bump changelog","shortMessageHtmlLink":"Bump changelog"}},{"before":null,"after":"457bdd992a86116dc6b3e5278e381b59024919e7","ref":"refs/heads/fix_tximport_summarizedexperiment","pushedAt":"2024-09-13T10:30:04.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Fix R module name-mangling issues","shortMessageHtmlLink":"Fix R module name-mangling issues"}},{"before":"41bbfdff82449a89f98d8e687027a40d43a78d73","after":"5d20e28c94d7579cf5b3808ff6436ae6b6d5abb3","ref":"refs/heads/pditommaso-patch-1","pushedAt":"2024-09-10T14:39:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Update CHANGELOG.md","shortMessageHtmlLink":"Update CHANGELOG.md"}},{"before":"7b6915c40c73e309368cc9bf16f1a6b190da4401","after":"41bbfdff82449a89f98d8e687027a40d43a78d73","ref":"refs/heads/pditommaso-patch-1","pushedAt":"2024-09-06T15:17:05.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"ewels","name":"Phil Ewels","path":"/ewels","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/465550?s=80&v=4"},"commit":{"message":"Merge branch 'dev' into pditommaso-patch-1","shortMessageHtmlLink":"Merge branch 'dev' into pditommaso-patch-1"}},{"before":null,"after":"7b6915c40c73e309368cc9bf16f1a6b190da4401","ref":"refs/heads/pditommaso-patch-1","pushedAt":"2024-09-06T13:37:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"pditommaso","name":"Paolo Di Tommaso","path":"/pditommaso","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/816968?s=80&v=4"},"commit":{"message":"Update main.nf","shortMessageHtmlLink":"Update main.nf"}},{"before":"8446cbc5aebe1d4ea51df157927e624eb9543e62","after":"085ecfe8c46a6e2766990c0195de608d04e3e01f","ref":"refs/heads/dev","pushedAt":"2024-09-05T10:24:21.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Merge pull request #1374 from nf-core/postrelese_3.15.0\n\nBump pipeline version to 3.16.0dev","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2507334622\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/rnaseq/issues/1374\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/rnaseq/pull/1374/hovercard\" href=\"https://github.com/nf-core/rnaseq/pull/1374\">#1374</a> from nf-core/postrelese_3.15.0"}},{"before":"169318d162fd1b22564bd061ffd220e892216780","after":"4896bd00a5bbdbf58e3adf7411f5bc8f6b411e2c","ref":"refs/heads/postrelese_3.15.0","pushedAt":"2024-09-05T10:07:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Update changelog","shortMessageHtmlLink":"Update changelog"}},{"before":"ad85ab2b1c7fe07a8508124db2bdfdccc6ff5bdd","after":"169318d162fd1b22564bd061ffd220e892216780","ref":"refs/heads/postrelese_3.15.0","pushedAt":"2024-09-05T10:03:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"pinin4fjords","name":"Jonathan Manning","path":"/pinin4fjords","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5775915?s=80&v=4"},"commit":{"message":"Update CHANGELOG.md\n\nCo-authored-by: Maxime U Garcia <max.u.garcia@gmail.com>","shortMessageHtmlLink":"Update CHANGELOG.md"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEuyxAJgA","startCursor":null,"endCursor":null}},"title":"Activity · nf-core/rnaseq"}