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@bcgsc

BC Cancer Canada's Michael Smith Genome Sciences Centre

Sequencing Centre for Genomics and Bioinformatics Research

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  1. RNA-Bloom RNA-Bloom Public

    🌺 reference-free transcriptome assembly for short and long reads

    Java 90 7

  2. LongStitch LongStitch Public

    Correct and scaffold assemblies using long reads

    Makefile 45 7

  3. ntRoot ntRoot Public

    🌳 Human ancestry inference from genomic data

    Python 4

  4. btllib btllib Public

    Bioinformatics Technology Lab common code library

    C++ 21 5

  5. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 64 9

  6. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 34 2

Repositories

Showing 10 of 114 repositories
  • amnatate Public

    Draft genome completeness assessment using hash based approach

    bcgsc/amnatate’s past year of commit activity
    C++ 1 GPL-3.0 0 0 1 Updated Sep 19, 2024
  • pori_ipr_api Public

    Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform

    bcgsc/pori_ipr_api’s past year of commit activity
    JavaScript 8 0 0 5 Updated Sep 18, 2024
  • straglr Public

    Tandem repeat expansion detection or genotyping from long-read alignments

    bcgsc/straglr’s past year of commit activity
    Python 60 9 13 1 Updated Sep 18, 2024
  • ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    bcgsc/ntSynt’s past year of commit activity
    Python 67 GPL-3.0 1 0 0 Updated Sep 18, 2024
  • pori_graphkb_client Public

    Front-end web client for the GraphKB project

    bcgsc/pori_graphkb_client’s past year of commit activity
    TypeScript 9 GPL-3.0 1 14 0 Updated Sep 18, 2024
  • NanoSim Public

    Nanopore sequence read simulator

    bcgsc/NanoSim’s past year of commit activity
    Python 231 56 36 (9 issues need help) 2 Updated Sep 17, 2024
  • ntJoin Public

    🔗Genome assembly scaffolder using minimizer graphs

    bcgsc/ntJoin’s past year of commit activity
    Python 81 GPL-3.0 15 3 0 Updated Sep 17, 2024
  • pori_ipr_client Public

    Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI

    bcgsc/pori_ipr_client’s past year of commit activity
    TypeScript 8 GPL-3.0 1 0 1 Updated Sep 17, 2024
  • pori_graphkb_loader Public

    The Loaders for GraphKB. Imports content from external sources via the GraphKB REST API

    bcgsc/pori_graphkb_loader’s past year of commit activity
    JavaScript 6 GPL-3.0 4 12 2 Updated Sep 16, 2024
  • goldpolish Public

    GoldPolish (aka GoldRush-Edit) is a long read sequence polisher used in the GoldRush assembler

    bcgsc/goldpolish’s past year of commit activity
    C++ 4 GPL-3.0 0 1 1 Updated Sep 14, 2024
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