Bulk: testing for failures #2
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: PR to Bulk branch | |
| on: | |
| pull_request: | |
| branches: | |
| - bulk | |
| types: [opened, synchronize, reopened] | |
| concurrency: | |
| group: build-${{ github.event.pull_request.number || github.head_ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build_and_test-osx: | |
| name: Bulk PR OSX | |
| runs-on: macos-13 # amd64 | |
| strategy: | |
| fail-fast: true | |
| max-parallel: 13 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: set path | |
| run: echo "/opt/mambaforge/bin" >> $GITHUB_PATH | |
| - name: Fetch conda install script | |
| run: | | |
| wget https://raw.githubusercontent.com/bioconda/bioconda-common/bulk/{common,install-and-set-up-conda,configure-conda}.sh | |
| - name: Set up bioconda-utils | |
| run: bash install-and-set-up-conda.sh | |
| - name: Configure conda | |
| run: bash configure-conda.sh | |
| - name: Build and Test | |
| env: | |
| # Mimic circleci | |
| OSTYPE: "darwin" | |
| CI: "true" | |
| run: | | |
| set -e | |
| eval "$(conda shell.bash hook)" | |
| conda activate bioconda | |
| # Clean up lingering build artifacts | |
| rm -f /opt/mambaforge/envs/bioconda/conda-bld/osx-64/*.tar.bz2 | |
| # The SDK isn't actually cached, so reinstall it | |
| run_conda_forge_build_setup | |
| if [ -z "$GITHUB_BASE_REF" ] ; then | |
| export GITHUB_BASE_REF="bulk" | |
| fi | |
| git fetch origin "$GITHUB_BASE_REF" | |
| bioconda-utils build recipes config.yml \ | |
| --lint \ | |
| --git-range origin/"$GITHUB_BASE_REF" HEAD | |
| - name: Prepare artifacts | |
| run: | | |
| ( | |
| rm -rf /tmp/artifacts | |
| mkdir -p /tmp/artifacts/packages | |
| cd /opt/mambaforge/envs/bioconda/conda-bld || exit 0 | |
| find -name .cache | xargs rm -rf || true | |
| for n in index.html channeldata.json osx-64 noarch; do | |
| cp -rv $n /tmp/artifacts/packages || true | |
| done | |
| ) || true | |
| - name: Archive packages | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: osx-64-packages | |
| path: | | |
| /tmp/artifacts |