Skip to content

mummer 4.0.0rc1

mummer 4.0.0rc1 #2041

Triggered via pull request August 19, 2024 02:19
@YoshitakaMoYoshitakaMo
synchronize #1832
mummer
Status Failure
Total duration 10m 58s
Artifacts 2

build-bottles.yml

on: pull_request
Matrix: build-bottles
Fit to window
Zoom out
Zoom in

Annotations

6 errors and 3 warnings
build-bottles (macos-13)
brewsci/bio/mummer 4.0.0rc1 did not build
`brew linkage --test brewsci/bio/circlator` failed on Linux!: Formula/circlator.rb#L1
Missing libraries: libcrypto.so.1.0.0 libpython3.7m.so.1.0
build-bottles (ubuntu-latest)
brewsci/bio/circlator: failed
`brew test --retry --verbose brewsci/bio/circlator` failed on Linux!: Formula/circlator.rb#L73
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/bin/bundle clean ==> Testing brewsci/bio/circlator ==> /home/linuxbrew/.linuxbrew/Cellar/circlator/1.5.5/bin/circlator test outdir /home/linuxbrew/.linuxbrew/Cellar/circlator/1.5.5/libexec/bin/python3.7: error while loading shared libraries: libpython3.7m.so.1.0: cannot open shared object file: No such file or directory ==> Testing brewsci/bio/circlator (again) ==> /home/linuxbrew/.linuxbrew/Cellar/circlator/1.5.5/bin/circlator test outdir /home/linuxbrew/.linuxbrew/Cellar/circlator/1.5.5/libexec/bin/python3.7: error while loading shared libraries: libpython3.7m.so.1.0: cannot open shared object file: No such file or directory Error: brewsci/bio/circlator: failed ::error::brewsci/bio/circlator: failed An exception occurred within a child process: Minitest::Assertion: Expected: 0 Actual: 127 /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.3.0/gems/minitest-5.25.1/lib/minitest/assertions.rb:176:in `assert' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.3.0/gems/minitest-5.25.1/lib/minitest/assertions.rb:216:in `assert_equal' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula_assertions.rb:28:in `shell_output' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.3.0/gems/sorbet-runtime-0.5.11528/lib/types/private/methods/call_validation.rb:270:in `bind_call' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.3.0/gems/sorbet-runtime-0.5.11528/lib/types/private/methods/call_validation.rb:270:in `validate_call' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.3.0/gems/sorbet-runtime-0.5.11528/lib/types/private/methods/_methods.rb:277:in `block in _on_method_added' /home/linuxbrew/.linuxbrew/Homebrew/Library/Taps/brewsci/homebrew-bio/Formula/circlator.rb:75:in `block in <class:Circlator>' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:2800:in `block (3 levels) in run_test' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/extend/kernel.rb:536:in `with_env' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:2799:in `block (2 levels) in run_test' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:1193:in `with_logging' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:2798:in `block in run_test' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/mktemp.rb:75:in `block in run' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/mktemp.rb:75:in `chdir' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/mktemp.rb:75:in `run' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:3109:in `mktemp' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:2792:in `run_test' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/test.rb:48:in `block in <main>' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/timeout.rb:186:in `block in timeout' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/timeout.rb:41:in `handle_timeout' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/timeout.rb:195:in `timeout' /home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/test.rb:52:in `<main>'
`brew linkage --test brewsci/bio/iva` failed on Linux!: Formula/iva.rb#L1
Unwanted system libraries: /lib/x86_64-linux-gnu/libcrypto.so.1.1
build-bottles (ubuntu-latest)
Process completed with exit code 1.
`brew install --verbose --formula --build-bottle brewsci/bio/mummer` failed on macOS Ventura (13)!: Formula/mummer.rb#L38
checking for fgrep... /usr/bin/grep -F checking for ld used by clang... /Applications/Xcode_15.2.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode_15.2.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 786432 checking how to convert x86_64-apple-darwin22.6.0 file names to x86_64-apple-darwin22.6.0 format... func_convert_file_noop checking how to convert x86_64-apple-darwin22.6.0 file names to toolchain format... func_convert_file_noop checking for /Applications/Xcode_15.2.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @file support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from clang object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... ld: warning: -single_module is obsolete no checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if clang supports -fno-rtti -fno-exceptions... yes checking for clang option to produce PIC... -fno-common -DPIC checking if clang PIC flag -fno-common -DPIC works... yes checking if clang static flag -static works... no checking if clang supports -c -o file.o... yes checking if clang supports -c -o file.o... (cached) yes checking whether the clang linker (/Applications/Xcode_15.2.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin22.6.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether the compiler supports GNU C++... yes checking whether clang++ accepts -g... yes checking for clang++ option to enable C++11 features... -std=gnu++11 checking dependency style of clang++ -std=gnu++11... none checking how to run the C++ preprocessor... clang++ -std=gnu++11 -E checking for ld used by clang++ -std=gnu++11... /Applications/Xcode_15.2.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode_15.2.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking whether the clang++ -std=gnu++11 linker (/Applications/Xcode_15.2.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking for clang++ -std=gnu++11 option to produce PIC... -fno-common -DPIC checking if clang++ -std=gnu++11 PIC flag -fno-common -DPIC works... yes checking if clang++ -std=gnu++11 static flag -static works... no checking if clang++ -std=gnu++11 supports -c -o file.o... yes checkin
build-bottles (macos-13)
install failed
build-bottles (macos-13)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size
bottles-macos-14
3.88 MB
bottles-ubuntu-latest
4.02 MB