mummer 4.0.0rc1 #2041
build-bottles.yml
on: pull_request
Matrix: build-bottles
merge
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6 errors and 3 warnings
build-bottles (macos-13)
brewsci/bio/mummer 4.0.0rc1 did not build
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`brew linkage --test brewsci/bio/circlator` failed on Linux!:
Formula/circlator.rb#L1
Missing libraries:
libcrypto.so.1.0.0
libpython3.7m.so.1.0
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build-bottles (ubuntu-latest)
brewsci/bio/circlator: failed
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`brew test --retry --verbose brewsci/bio/circlator` failed on Linux!:
Formula/circlator.rb#L73
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/bin/bundle clean
==> Testing brewsci/bio/circlator
==> /home/linuxbrew/.linuxbrew/Cellar/circlator/1.5.5/bin/circlator test outdir
/home/linuxbrew/.linuxbrew/Cellar/circlator/1.5.5/libexec/bin/python3.7: error while loading shared libraries: libpython3.7m.so.1.0: cannot open shared object file: No such file or directory
==> Testing brewsci/bio/circlator (again)
==> /home/linuxbrew/.linuxbrew/Cellar/circlator/1.5.5/bin/circlator test outdir
/home/linuxbrew/.linuxbrew/Cellar/circlator/1.5.5/libexec/bin/python3.7: error while loading shared libraries: libpython3.7m.so.1.0: cannot open shared object file: No such file or directory
Error: brewsci/bio/circlator: failed
::error::brewsci/bio/circlator: failed
An exception occurred within a child process:
Minitest::Assertion: Expected: 0
Actual: 127
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.3.0/gems/minitest-5.25.1/lib/minitest/assertions.rb:176:in `assert'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.3.0/gems/minitest-5.25.1/lib/minitest/assertions.rb:216:in `assert_equal'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula_assertions.rb:28:in `shell_output'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.3.0/gems/sorbet-runtime-0.5.11528/lib/types/private/methods/call_validation.rb:270:in `bind_call'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.3.0/gems/sorbet-runtime-0.5.11528/lib/types/private/methods/call_validation.rb:270:in `validate_call'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/bundle/ruby/3.3.0/gems/sorbet-runtime-0.5.11528/lib/types/private/methods/_methods.rb:277:in `block in _on_method_added'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Taps/brewsci/homebrew-bio/Formula/circlator.rb:75:in `block in <class:Circlator>'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:2800:in `block (3 levels) in run_test'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/extend/kernel.rb:536:in `with_env'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:2799:in `block (2 levels) in run_test'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:1193:in `with_logging'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:2798:in `block in run_test'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/mktemp.rb:75:in `block in run'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/mktemp.rb:75:in `chdir'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/mktemp.rb:75:in `run'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:3109:in `mktemp'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/formula.rb:2792:in `run_test'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/test.rb:48:in `block in <main>'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/timeout.rb:186:in `block in timeout'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/timeout.rb:41:in `handle_timeout'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/vendor/portable-ruby/3.3.4_1/lib/ruby/3.3.0/timeout.rb:195:in `timeout'
/home/linuxbrew/.linuxbrew/Homebrew/Library/Homebrew/test.rb:52:in `<main>'
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`brew linkage --test brewsci/bio/iva` failed on Linux!:
Formula/iva.rb#L1
Unwanted system libraries:
/lib/x86_64-linux-gnu/libcrypto.so.1.1
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build-bottles (ubuntu-latest)
Process completed with exit code 1.
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`brew install --verbose --formula --build-bottle brewsci/bio/mummer` failed on macOS Ventura (13)!:
Formula/mummer.rb#L38
checking for fgrep... /usr/bin/grep -F
checking for ld used by clang... /Applications/Xcode_15.2.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker (/Applications/Xcode_15.2.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 786432
checking how to convert x86_64-apple-darwin22.6.0 file names to x86_64-apple-darwin22.6.0 format... func_convert_file_noop
checking how to convert x86_64-apple-darwin22.6.0 file names to toolchain format... func_convert_file_noop
checking for /Applications/Xcode_15.2.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @file support... no
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from clang object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for lipo... lipo
checking for otool... otool
checking for otool64... no
checking for -single_module linker flag... ld: warning: -single_module is obsolete
no
checking for -exported_symbols_list linker flag... yes
checking for -force_load linker flag... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if clang supports -fno-rtti -fno-exceptions... yes
checking for clang option to produce PIC... -fno-common -DPIC
checking if clang PIC flag -fno-common -DPIC works... yes
checking if clang static flag -static works... no
checking if clang supports -c -o file.o... yes
checking if clang supports -c -o file.o... (cached) yes
checking whether the clang linker (/Applications/Xcode_15.2.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin22.6.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether the compiler supports GNU C++... yes
checking whether clang++ accepts -g... yes
checking for clang++ option to enable C++11 features... -std=gnu++11
checking dependency style of clang++ -std=gnu++11... none
checking how to run the C++ preprocessor... clang++ -std=gnu++11 -E
checking for ld used by clang++ -std=gnu++11... /Applications/Xcode_15.2.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker (/Applications/Xcode_15.2.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
checking whether the clang++ -std=gnu++11 linker (/Applications/Xcode_15.2.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking for clang++ -std=gnu++11 option to produce PIC... -fno-common -DPIC
checking if clang++ -std=gnu++11 PIC flag -fno-common -DPIC works... yes
checking if clang++ -std=gnu++11 static flag -static works... no
checking if clang++ -std=gnu++11 supports -c -o file.o... yes
checkin
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build-bottles (macos-13)
install failed
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build-bottles (macos-13)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.
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Artifacts
Produced during runtime
Name | Size | |
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bottles-macos-14
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3.88 MB |
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bottles-ubuntu-latest
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4.02 MB |
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