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fix: rollback since we use per execution mount
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TarasPriadka committed Aug 31, 2024
1 parent 92863e7 commit 574d80a
Showing 1 changed file with 1 addition and 5 deletions.
6 changes: 1 addition & 5 deletions latch_cli/nextflow/workflow.py
Original file line number Diff line number Diff line change
Expand Up @@ -72,11 +72,7 @@ def initialize() -> str:
@nextflow_runtime_task(cpu={cpu}, memory={memory}, storage_gib={storage_gib})
def nextflow_runtime(pvc_name: str, {param_signature}) -> None:
token = os.environ.get("FLYTE_INTERNAL_EXECUTION_ID")
if token is None:
raise RuntimeError("failed to get execution token")
shared_dir = Path(f"/nf-workdir/{{token}}")
shared_dir = Path(f"/nf-workdir")
{output_shortcuts}
{samplesheet_constructors}
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