You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi all, I have encountered a buggy behaviour in samplesheet processing:
My samplesheet has specified absolute paths to different files (/path/to/run_01/ and /path/to/run_02/) with same filename: this is typical for pooling re-sequencing libraries:
nextflow run nf-core/methylseq -profile ku_sund_danhead,dancmpn01fl -r 2.6.0 -params-file nfcore-methylseq-params.yaml --outdir GRCm38 --genome GRCm38 --aligner bismarkERROR ~ Error executing process > 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (16)'Caused by: Process `NFCORE_METHYLSEQ:METHYLSEQ:FASTQC` input file name collision -- There are multiple input files for each of the following file names: Sample1_R1.fastq.gz, Sample1_R2.fastq.gz
Relevant files
No response
System information
Nextflow version 23.10.1
Hardware: HPC
Executor: slurm
Container engine: Singularity
OS: Red Hat Enterprise Linux 8.9 (Ootpa)
Version of nf-core/methylseq v2.6.0-g54f823e
The text was updated successfully, but these errors were encountered:
AdrijaK
changed the title
samplesheet handling: different path + same filename gives a bug
samplesheet handling: different path + same filename gives an error
Jul 8, 2024
Description of the bug
Hi all, I have encountered a buggy behaviour in samplesheet processing:
My samplesheet has specified absolute paths to different files (
/path/to/run_01/
and/path/to/run_02/
) with same filename: this is typical for pooling re-sequencing libraries:Command used and terminal output
Relevant files
No response
System information
Nextflow version 23.10.1
Hardware: HPC
Executor: slurm
Container engine: Singularity
OS: Red Hat Enterprise Linux 8.9 (Ootpa)
Version of nf-core/methylseq v2.6.0-g54f823e
The text was updated successfully, but these errors were encountered: