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welch-lab

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  1. liger liger Public

    R package for integrating and analyzing multiple single-cell datasets

    R 381 78

  2. MultiVelo MultiVelo Public

    Multi-omic velocity inference

    Python 105 12

  3. VeloVAE VeloVAE Public

    Deep Generative Modeling of RNA Velocity

    Jupyter Notebook 34 5

  4. pyliger pyliger Public

    Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)

    Jupyter Notebook 28 5

  5. PerturbNet PerturbNet Public

    PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

    Python 28 10

  6. SquiggleNet SquiggleNet Public

    Python 20 6

Repositories

Showing 10 of 26 repositories
  • welch-lab.github.io Public Forked from vittala23/welchlab

    Welch Lab

    welch-lab/welch-lab.github.io’s past year of commit activity
    HTML 0 1,150 0 0 Updated Sep 19, 2024
  • welch-lab/RcppPlanc’s past year of commit activity
    C++ 3 GPL-2.0 1 2 0 Updated Sep 18, 2024
  • MultiVelo Public

    Multi-omic velocity inference

    welch-lab/MultiVelo’s past year of commit activity
    Python 105 BSD-3-Clause 12 16 0 Updated Sep 18, 2024
  • steamer Public
    welch-lab/steamer’s past year of commit activity
    Python 0 0 0 0 Updated Sep 18, 2024
  • CytoSimplex Public

    Simplex plot showing similarity between single-cells and clusters

    welch-lab/CytoSimplex’s past year of commit activity
    R 1 0 1 0 Updated Sep 18, 2024
  • welch-lab/cytosignal’s past year of commit activity
    R 13 0 2 0 Updated Sep 16, 2024
  • VeloVAE Public

    Deep Generative Modeling of RNA Velocity

    welch-lab/VeloVAE’s past year of commit activity
    Jupyter Notebook 34 BSD-3-Clause 5 5 0 Updated Aug 16, 2024
  • pyliger Public

    Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)

    welch-lab/pyliger’s past year of commit activity
    Jupyter Notebook 28 GPL-3.0 5 6 0 Updated Jul 14, 2024
  • TopoVelo Public
    welch-lab/TopoVelo’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jul 10, 2024
  • welch-lab/ConvNetVAE’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 1 0 Updated May 30, 2024

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